Participate to a online evening of fun activities with other students who use microscopy across the world! 🙂
Scan the code to register and choose Other for microscopy society.
The Live Cell Imaging facility
@ Karolinska Institutet, Sweden
Participate to a online evening of fun activities with other students who use microscopy across the world! 🙂
Scan the code to register and choose Other for microscopy society.
Dear all
It is my pleasure to invite you to follow the LCI facility microscopy course Microscopy: improve your imaging skills – from sample preparation to image analysis.
The course starts next Monday (29 Jan) and runs until the 16th of February.
As usual, all the course lectures are broadcasted live on Zoom. It is free of charge and you do not need to register.
The aim for this course is to improve the microscopy skills of students and researchers who have already used a microscope to acquire digital images of fluorescent samples but feel that more knowledge could help them.
Here is a selection of what we will talk about:
Check our course webpage to see the course schedule (Broadcasted activities are in blue) and the Zoom link. Scroll down to read the kind testimonies of our dear students! 🙂
Here is the course syllabus.
For those who are on a far away time zome, we record all the live lectures and post them every evening on the LCI facility YouTube channel! 🙂
We hope that you will enjoy the LCI facility microscopy course!
Kindly forward to anyone who might be interested.
The LCI team
Spatial transcriptomics techniques are booming! It is now possible to identify where RNAs are located within a tissue! At the LCI facility, we routinely image samples labelled with RNAscope. If you use RNAscope, you might be interested in this workshop where you will learn how to label thick samples with RNAscope, and this symposium about automated RNAscope.
Additionally, we can now offer the 10x Genomics Visium technology on the South Campus, as a collaboration between 4 core facilities in Flemingsberg: LCI, FENO, SICOF and BEA core facilities!
Here is the workflow:
Come and talk to us about your Spatial Transcriptomics project!
We are delighted to invite you to the Nordic microscopy symposium at the Live Cell Imaging core facility, Nikon Centre of Excellence at Karolinska Institutet, organised by BergmanLabora, Ramcon Denmark and Inter Instrument AS.
Venue: Neo, Flemingsberg Campus, Karolinska Institute: Erna Möller Lecture hall (Symposium), Live Cell Imaging (LCI) core facility (Demos)
3rd October
4th and 5th October
Registration is mandatory and can be done via the following site: Nordic Microscopy Symposium – BergmanLabora.
Please share this event with friends and colleagues who may also be interested in attending.
Two really nice symposia/workshop on clearing and expansion microscopy next week!
Microscopy course: improve your imaging skills – from sample preparation to image analysis
Starting from next week, the Live Cell Imaging core facility at KI will run its yearly microscopy course.
All the course lectures will be broadcasted live on Zoom, free of charge and there is no need to register. On this page, you can find the course schedule (public activities are in blue) and the Zoom link to join. Scroll down to read the student testimonies! 😊
30 Jan – 17 Feb 2023
The aim for this course is to improve the microscopy skills of students and researchers who have already used a microscope to acquire digital images of fluorescent samples but feel that more knowledge could help them.
The course covers the following topics:
Hope you enjoy the Live Cell Imaging core facility microscopy course! 😃
Light-Seq is a new pretty cool technique for highly multiplexed sequencing of RNA in tissue sections using light. This technique is highly sensitive, highly spatially resolved and because it does not destroy the tissue, it can be combined with protein labelling (genetic or by immunolabelling).
On one of our single-point confocal/spinning disk/widefield system at the LCI facility, we have a device called Primo (DMD + UV laser) which can be used to run this technique! 🙂
Let us know if you would like to set up LightSeq at the LCI core facility!
The BioImage Informatics facility at Scilife organizes a new presentation on free and open-source tools: TissUUmaps, a browser-based tool for GPU-accelerated visualization and interactive exploration of millions of datapoints overlaying tissue samples.
Users can visualize markers and regions, explore spatial statistics and quantitative analyses of tissue morphology, and assess the quality of decoding in situ transcriptomics data. TissUUmaps provides instant multi-resolution image viewing, can be customized, shared, and also integrated in Jupyter Notebooks. TissUUmaps was created in collaboration between BIIF and the Wählby lab. You can read more about it and test the software on its web page: https://tissuumaps.github.io/
During the seminar, we will go through basic usage of TissUUmaps: installation, loading images, markers and regions, change visualization settings, and how to load / save / share projects. The webinar will be given by Christophe Avenel and will take place on March 3rd, 09:00-10:00 (instead of our normal Call4Help session). There will be time for questions and discussion, so we hope this event to be very interactive. Please register here.
Starting from next week, the Live Cell Imaging core facility at KI will run its yearly microscopy course.
All the course lectures and some workshops will broadcasted live on Zoom, free of charge and there is no need to register.
Name: Microscopy: improve your imaging skills – from sample preparation to image analysis
Date: 24 Jan – 11 Feb 2022
Target audience:
The aim for this course is to improve the microscopy skills of students and researchers who have already used a microscope to acquire digital images of fluorescent samples but feel that more knowledge could help them.
The course covers the following topics:
On this page, you can find the course schedule (public activities are in blue) and the Zoom link to join. Scroll down to read the student testimonies! 😊
Hope you enjoy the Live Cell Imaging core facility microscopy course 2022! 😃
Lots of interesting courses and webinars about microscopy in these corona times. The BioImage Informatics facility at Scilife will present how useful it is to build imaging pipelines with Fiji/imageJ.
April 6th, 10:00-11:00: “ImageJ/Fiji – Make Your Own Macros – Overview”. This is not to teach how to script but to give you an overview of the scripting possibilities in ImageJ/Fiji. Please register here.
Version 2.0 of TissUUmaps is now released: TissUUmaps allows fast interactive display of tissue slide images and uses an overlay to display any sort of marker data on top. Be it spatially resolved gene expression, per cell data, or regions of interest. TissUUmaps is developed in the Wählby-Lab, with involvement of BIIF, and was first published in https://doi.org/10.1093/bioinformatics/btaa541.
Try out TissUUmaps and interact with a in-situ-sequencing dataset on a brain slice!
Advanced Methods in Bioimage Analysis, Online EMBO Practical Course, 26 Jun – 2 Jul 2021; Registration Deadline: 5 Apr 2021
This advanced course concentrates on teaching cutting-edge concepts and tools for quantitative image analysis, and will seek to upgrade the competencies of future bioimage analysis experts on both theoretical algorithm advancements as well as on practical implementation skills. BIIF is part of the scientific organization team. Register here.
Global BioImaging-ZEISS webinar series in Light Microscopy
Check here to see some nice general microscopy webinars by Global Bioimaging, the global pendant to Euro Bioimaging: